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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85570935_85571200_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
85570935 - 85571200
Intron Length:
266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGAGAA
U12 Branch Point Sequence:
TGCATGAGAAGT
Flanking Amino Acid:
KNEHLEKLRKDGDLLFQQVP
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.8
81.3
32.8
Major BPS
48.4
-0.1
1.1
44.5
38.7
Major PPT
88.8
0.87
0.7
81.3
36.4
Minor 5ss
33.3
-1.9
3
43.8
43.9
Minor BPS
35
-1
2.3
50.64
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005503
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005683
85563224 - 85580320
17097