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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85571253_85572160_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
85571253 - 85572160
Intron Length:
908

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTACC
5'SS Class:
major
3'SS Sequence:
CTTTGCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACACAA
U12 Branch Point Sequence:
AGTTACACAATG
Flanking Amino Acid:
RWLLAAAGVEFEEQFIEKNE
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1.1
72.7
36.5
Major BPS
60.7
0.27
1
67.2
29.6
Major PPT
87.1
0.84
0.7
84.4
30.5
Minor 5ss
39.4
-1.2
2.3
47.3
41.1
Minor BPS
45.2
-0.5
2
53.43
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005503
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005683
85563224 - 85580320
17097