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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85578022_85578634_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
5UTR
Intron Coordinates:
85578022 - 85578634
Intron Length:
613

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAATGTAC
5'SS Class:
weak_major
3'SS Sequence:
TATTCCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGTGTTTGAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.8
0.21
1.2
56.2
37.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
85.8
0.81
0.8
77.5
36.4
Minor 5ss
40
-1.1
3.4
59.7
45
Minor BPS
56.6
0.29
1.5
72.62
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005503
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005683
85563224 - 85580320
17097