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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85590613_85590969_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
85590613 - 85590969
Intron Length:
357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCTTG
5'SS Class:
major
3'SS Sequence:
ACACTATGACTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
TTAACCTCACCA
Flanking Amino Acid:
AVLSGFPQLQELKPWHYPAF
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.6
40.9
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
51.9
0.04
1
44.7
40.7
Minor 5ss
47.5
-0.2
2.8
64.6
46.7
Minor BPS
54.6
0.14
1.9
69.68
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005277
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041922
85590504 - 85596451
5948