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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85591102_85592152_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
85591102 - 85592152
Intron Length:
1051

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTATTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCTTGTATT
Flanking Amino Acid:
TKRYFPVFEKILKQHGQDFL
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
82.7
0.74
0.9
76.8
37.1
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
55.8
0.26
1.8
76.15
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005277
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046321
85588747 - 85596451
7705
ENSAPLT00000041922
85590504 - 85596451
5948
ENSAPLT00000005463
85588747 - 85596894
8148