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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85592750_85596078_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
85592750 - 85596078
Intron Length:
3329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTGCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TTTCCCTCACCT
Flanking Amino Acid:
TKEQLEKLIKGGDLLFQQVP
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
89.9
22.1
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
72.8
0.51
0.8
65.7
36
Minor 5ss
37.1
-1.5
3
48.8
46.9
Minor BPS
64.2
0.52
1.9
86.08
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005277
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041922
85590504 - 85596451
5948
ENSAPLT00000005463
85588747 - 85596894
8148
ENSAPLT00000046321
85588747 - 85596451
7705