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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85596131_85596772_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
85596131 - 85596772
Intron Length:
642

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
AGCCATGTAATG
Flanking Amino Acid:
RWLLAAAGVEFEENFVETKE
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1.1
70.9
41.9
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
91.2
0.93
0.6
84.1
30.8
Minor 5ss
36
-1.6
2.6
41.8
44.7
Minor BPS
40.6
-0.8
2
40.48
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005277
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005463
85588747 - 85596894
8148