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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85613712_85614689_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
85613712 - 85614689
Intron Length:
978

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTCGT
5'SS Class:
strong_major
3'SS Sequence:
ATGGTGCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CATGTCTGAACA
Flanking Amino Acid:
TSRYFPVYEKVLKDHGQDFL
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
1
72.9
44.2
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
69.5
0.44
1
58.7
46.7
Minor 5ss
34.9
-1.7
3.2
50.6
45.7
Minor BPS
57.2
0.22
1.6
64.8
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026652
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018887
85612091 - 85620203
8113