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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85616309_85616648_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
85616309 - 85616648
Intron Length:
340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
GTGTTCTTAAGT
Flanking Amino Acid:
TREQYEKLLQSGSLLFQQVP
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
0.9
73.9
29.7
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
85.5
0.8
0.7
83.9
24.3
Minor 5ss
29.2
-2.4
3.1
32.8
35.7
Minor BPS
68.2
0.65
1.6
80.01
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026652
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018887
85612091 - 85620203
8113