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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85616701_85618066_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
85616701 - 85618066
Intron Length:
1366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTTTC
5'SS Class:
major
3'SS Sequence:
TTGTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TCTTCCTTATTC
Flanking Amino Acid:
RWLLAAAGVEFEEEFLETRE
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
76.1
34
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
92.9
0.97
0.7
92.3
26.6
Minor 5ss
47.2
-0.3
2.4
61.9
42.9
Minor BPS
72.1
0.67
1.5
77.93
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026652
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018887
85612091 - 85620203
8113