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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85625946_85627400_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
85625946 - 85627400
Intron Length:
1455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATGT
5'SS Class:
strong_major
3'SS Sequence:
CCATTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
TTGTATTGACCT
Flanking Amino Acid:
LGGSINRINSGPIGSSGLSS
Intron Amino Acid Position:
500

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
81.6
33.2
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
82.9
0.74
0.8
80.5
31.3
Minor 5ss
39.7
-1.2
3.1
56.6
47.5
Minor BPS
49.8
0.06
1.9
73.53
43.4

Associated Gene:

Gene:
ICK
Ensembl Gene ID:
ENSAPLG00000004572
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004730
85622106 - 85649561
27456