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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85628161_85634008_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
85628161 - 85634008
Intron Length:
5848

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGGGTTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAGTAT
U12 Branch Point Sequence:
AAGTATTGGACT
Flanking Amino Acid:
KKRQNDETLCRFESILDLKP
Intron Amino Acid Position:
406

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
29.3
Major BPS
52
0.05
1.4
52
43.5
Major PPT
75.1
0.57
1
68.8
42.1
Minor 5ss
41.9
-0.9
2.9
58.7
45.8
Minor BPS
48.4
-0
1.7
63.79
40.3

Associated Gene:

Gene:
ICK
Ensembl Gene ID:
ENSAPLG00000004572
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004730
85622106 - 85649561
27456