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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85635528_85637911_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
85635528 - 85637911
Intron Length:
2384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGGTTC
5'SS Class:
major
3'SS Sequence:
CATTATGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCTTCATTATGT
Flanking Amino Acid:
DPKKRPTASQALRYPYFQVG
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.2
67.7
38.2
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
72.8
0.51
0.9
69.7
40.9
Minor 5ss
43.7
-0.7
3
59.1
45.8
Minor BPS
52.7
0.16
2.2
76.82
45.6

Associated Gene:

Gene:
ICK
Ensembl Gene ID:
ENSAPLG00000004572
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004730
85622106 - 85649561
27456