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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85638080_85638566_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
85638080 - 85638566
Intron Length:
487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTCATTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTGAACTTACTT
Flanking Amino Acid:
ICQVLGTPKKNDWPEGYQLS
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
76.7
33.9
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
81.3
0.7
0.8
72.7
37.5
Minor 5ss
29.2
-2.4
2.8
33.9
41.6
Minor BPS
53.8
0.2
1.9
73.52
43.5

Associated Gene:

Gene:
ICK
Ensembl Gene ID:
ENSAPLG00000004572
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004730
85622106 - 85649561
27456