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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85638739_85639188_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
85638739 - 85639188
Intron Length:
450

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CTCACTCTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGGGAT
U12 Branch Point Sequence:
TTTCCCCTCACT
Flanking Amino Acid:
PPYTDYVSTRWYRAPEVLLR
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
31.8
Major BPS
56.3
0.16
1.6
57.1
49.4
Major PPT
78.7
0.65
0.8
71.8
32.7
Minor 5ss
33.1
-1.9
3.1
38.4
40.8
Minor BPS
61.1
0.43
2.1
86.59
38.8

Associated Gene:

Gene:
ICK
Ensembl Gene ID:
ENSAPLG00000004572
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004730
85622106 - 85649561
27456