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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85642706_85643469_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
85642706 - 85643469
Intron Length:
764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTGCT
5'SS Class:
major
3'SS Sequence:
TTTCTCCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CCCCTTTTAAAA
Flanking Amino Acid:
EECMNLREVKSLKKLNHANV
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1.1
71.8
38
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
85
0.79
0.7
77.9
30.9
Minor 5ss
34.3
-1.8
3.4
51
45.4
Minor BPS
49.7
-0
1.4
52.65
40

Associated Gene:

Gene:
ICK
Ensembl Gene ID:
ENSAPLG00000004572
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004730
85622106 - 85649561
27456