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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85643525_85645142_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
85643525 - 85645142
Intron Length:
1618

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TGTACCATTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTCCCTGTACC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
84.6
33.2
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
70.1
0.45
0.9
63.4
37.9
Minor 5ss
41.1
-1
2.8
51.8
38.9
Minor BPS
62.5
0.38
1.8
77.7
37.6

Associated Gene:

Gene:
ICK
Ensembl Gene ID:
ENSAPLG00000004572
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004730
85622106 - 85649561
27456