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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85653960_85656164_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
85653960 - 85656164
Intron Length:
2205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TCGGATGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTGGAATTAATC
Flanking Amino Acid:
NERSGEANLQAELQMFRAQW
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.9
0.9
80.5
35
Major BPS
83
0.82
0.8
82
24.9
Major PPT
65.4
0.35
1
61.7
44.2
Minor 5ss
48
-0.2
2.5
67.3
43.8
Minor BPS
50.3
-0
1.9
64.31
41.5

Associated Gene:

Gene:
FBXO9
Ensembl Gene ID:
ENSAPLG00000004171
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004315
85650293 - 85665710
15418
ENSAPLT00000041076
85650876 - 85665710
14835