Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85659038_85659558_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

85659038 - 85659558

Intron Length:

521

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGTGTG

5'SS Class:

strong_major

3'SS Sequence:

TCTCTCTTTCTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTTAT

U12 Branch Point Sequence:

TGTCCGATATCA

Flanking Amino Acid:

SPDGDGVGKRCVEDNEEDGK

Intron Amino Acid Position:

133

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.1

0.9

77.9

36.8

Major BPS

81.3

0.78

1.1

71.7

44.6

Major PPT

83.9

0.76

0.7

76.9

31.7

Minor 5ss

36.4

-1.5

3.3

46.1

43.6

Minor BPS

-0.4

2.4

62.86

42.8

Associated Gene:

Gene:

FBXO9

Ensembl Gene ID:

ENSAPLG00000004171

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041076

85650876 - 85665710

14835

ENSAPLT00000004315

85650293 - 85665710

15418