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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85664939_85665561_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
85664939 - 85665561
Intron Length:
623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
ATGCTCTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
TCTGATTTAACT
Flanking Amino Acid:
WIHHSCHITYKSTGETAVTT
Intron Amino Acid Position:
400

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
79.6
0.67
0.9
73.5
36.3
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
65.9
0.58
1.6
80.33
41.9

Associated Gene:

Gene:
FBXO9
Ensembl Gene ID:
ENSAPLG00000004171
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041076
85650876 - 85665710
14835
ENSAPLT00000004315
85650293 - 85665710
15418