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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85681812_85682821_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
85681812 - 85682821
Intron Length:
1010

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTATA
5'SS Class:
major
3'SS Sequence:
TTACTTTCTAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
CTCACTTTAACA
Flanking Amino Acid:
RHEGQFIFFQSKGAHDHPRP
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.2
79.2
36.3
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
73.9
0.54
1
75
33.6
Minor 5ss
34.3
-1.8
2.9
42.6
44.3
Minor BPS
69.5
0.61
1.3
71.49
41.1

Associated Gene:

Gene:
GCM1
Ensembl Gene ID:
ENSAPLG00000004160
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004262
85678879 - 85685980
7102