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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85682935_85683944_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
85682935 - 85683944
Intron Length:
1010

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
GTTTTTGCGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTCATAGGAACT
Flanking Amino Acid:
ICDKARQKQQRKCCPNCNGP
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
71.6
40.2
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
72.1
0.5
1.1
65.9
45.3
Minor 5ss
35.2
-1.7
2.8
39
40.2
Minor BPS
43.3
-0.4
2.3
66.29
44.1

Associated Gene:

Gene:
GCM1
Ensembl Gene ID:
ENSAPLG00000004160
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004262
85678879 - 85685980
7102