Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85684198_85685878_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

85684198 - 85685878

Intron Length:

1681

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACGTGTC

5'SS Class:

strong_major

3'SS Sequence:

GGTGTCTTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTAACAC

U12 Branch Point Sequence:

CCTGGCCTAACA

Flanking Amino Acid:

WDINDIKLPQDVRQTDWFQE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.3

0.88

0.9

79.8

Major BPS

49.5

-0

1.1

58.7

36.3

Major PPT

76.6

0.6

69.4

41.7

Minor 5ss

36.2

-1.6

3.5

52.1

45.1

Minor BPS

46.7

-0.2

2.2

59.22

46.6

Associated Gene:

Gene:

GCM1

Ensembl Gene ID:

ENSAPLG00000004160

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004262

85678879 - 85685980

7102