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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85715474_85716107_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
85715474 - 85716107
Intron Length:
634

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTAA
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
ACTTCTAAAACT
Flanking Amino Acid:
THSGGEADMKIIRVLWWYYF
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
73.8
32.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
82.9
0.74
0.7
76.4
32.3
Minor 5ss
36.1
-1.6
3.2
46.7
48.6
Minor BPS
53.9
0.2
1.9
74.84
42.2

Associated Gene:

Gene:
ELOVL5
Ensembl Gene ID:
ENSAPLG00000003669
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033965
85708327 - 85725042
16716
ENSAPLT00000003757
85710070 - 85731403
21334