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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85722788_85724837_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
85722788 - 85724837
Intron Length:
2050

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
GCGTTTGTAATT
Flanking Amino Acid:
SYLDVWLGPRDPRVKGWLLL
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
87.9
29.3
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
86.1
0.81
0.9
84.6
36
Minor 5ss
49.8
-0
2.8
73.2
43.7
Minor BPS
48.4
-0
2
62.99
42.5

Associated Gene:

Gene:
ELOVL5
Ensembl Gene ID:
ENSAPLG00000003669
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033965
85708327 - 85725042
16716
ENSAPLT00000003757
85710070 - 85731403
21334