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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85724904_85725005_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
85724904 - 85725005
Intron Length:
102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTTAGTATT
5'SS Class:
major
3'SS Sequence:
TCCATTTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTCTCTTCATCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66
0.38
1.3
75.9
39.5
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
73.4
0.53
0.9
69.1
35.7
Minor 5ss
40
-1.1
2.8
54.3
42.4
Minor BPS
60
0.39
1.8
79.81
42.6

Associated Gene:

Gene:
ELOVL5
Ensembl Gene ID:
ENSAPLG00000003669
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033965
85708327 - 85725042
16716