About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85724904_85731390_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
85724904 - 85731390
Intron Length:
6487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTGGCA
5'SS Class:
major
3'SS Sequence:
TCCATTTCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTCTCTTCATCT
Flanking Amino Acid:
MTGKDYRMERLDKT
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.1
59.5
39.5
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
73.4
0.53
0.9
69.1
35.7
Minor 5ss
28.2
-2.5
3.6
38.8
46.4
Minor BPS
60
0.39
1.8
79.81
42.6

Associated Gene:

Gene:
ELOVL5
Ensembl Gene ID:
ENSAPLG00000003669
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003757
85710070 - 85731403
21334