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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_8574041_8662018_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8574041 - 8662018
Intron Length:
87978

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAATG
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATAAA
U12 Branch Point Sequence:
TTTTTTTTCCCT
Flanking Amino Acid:
QVYVRNCTEPALHEFPNDIF
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1
75.5
40.6
Major BPS
63.5
0.33
1.2
64.3
39.6
Major PPT
88.2
0.86
0.7
83.7
24.4
Minor 5ss
35.7
-1.6
3.3
48
47.7
Minor BPS
45.4
-0.2
3.6
82.56
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024100
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027548
8543016 - 8664962
121947