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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85767350_85775355_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
85767350 - 85775355
Intron Length:
8006

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAGGATTT
5'SS Class:
major
3'SS Sequence:
CCAACTTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCATCTCCAACT
Flanking Amino Acid:
GQAECPELLGAPPDSNEHHE
Intron Amino Acid Position:
622

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.1
72.5
39.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
69.7
0.44
0.9
60.6
39.9
Minor 5ss
42
-0.9
3.4
56.1
48.1
Minor BPS
53.5
0.19
1.9
73.84
42.8

Associated Gene:

Gene:
GCLC
Ensembl Gene ID:
ENSAPLG00000003104
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040450
85764278 - 85806147
41870