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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85775514_85778934_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
85775514 - 85778934
Intron Length:
3421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTTTG
5'SS Class:
strong_major
3'SS Sequence:
ATCTTGCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAC
U12 Branch Point Sequence:
TTTGACTTGATC
Flanking Amino Acid:
YLKLIKKRASGELMTVARWM
Intron Amino Acid Position:
588

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
73.2
38.4
Major BPS
77.7
0.69
0.9
69.1
37.9
Major PPT
72.2
0.5
0.9
65.3
35.7
Minor 5ss
50.3
0.01
2.4
63.2
42.8
Minor BPS
63
0.39
1.6
74.47
36.7

Associated Gene:

Gene:
GCLC
Ensembl Gene ID:
ENSAPLG00000003104
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040450
85764278 - 85806147
41870
ENSAPLT00000020949
85774056 - 85851289
77234
ENSAPLT00000003193
85774056 - 85824291
50236