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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85779056_85779150_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
85779056 - 85779150
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCATAACC
5'SS Class:
major
3'SS Sequence:
TTCTCCTATACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTCATGTTAACT
Flanking Amino Acid:
MSIDTIINGKEGVFPGLIPI
Intron Amino Acid Position:
548

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.5
0.39
1.3
65.3
38.9
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
81.6
0.71
0.8
76.6
31
Minor 5ss
30.2
-2.3
2.7
36.9
39.7
Minor BPS
59.4
0.37
2.1
79.88
42.3

Associated Gene:

Gene:
GCLC
Ensembl Gene ID:
ENSAPLG00000003104
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020949
85774056 - 85851289
77234
ENSAPLT00000003193
85774056 - 85824291
50236
ENSAPLT00000040450
85764278 - 85806147
41870