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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85784760_85785521_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
85784760 - 85785521
Intron Length:
762

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTAAATTATATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TATTCTTAAATT
Flanking Amino Acid:
DRTREERGLEPLKNNHYRIS
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
68
0.41
1
62.4
42.9
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
70.3
0.71
1.6
84.68
36.4

Associated Gene:

Gene:
GCLC
Ensembl Gene ID:
ENSAPLG00000003104
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003193
85774056 - 85824291
50236
ENSAPLT00000040450
85764278 - 85806147
41870
ENSAPLT00000020949
85774056 - 85851289
77234