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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85786637_85789485_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
85786637 - 85789485
Intron Length:
2849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACGC
5'SS Class:
major
3'SS Sequence:
CTCTCTCTATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
GTTACAACAACT
Flanking Amino Acid:
GFGMGNCCLQVTFQACSISE
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
63.2
41.7
Major BPS
78.6
0.71
1
78.6
31
Major PPT
78.2
0.63
0.8
77.6
29.6
Minor 5ss
31.7
-2.1
3.2
42.6
44.3
Minor BPS
47.4
-0.1
2.1
72.97
42.7

Associated Gene:

Gene:
GCLC
Ensembl Gene ID:
ENSAPLG00000003104
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040450
85764278 - 85806147
41870
ENSAPLT00000020949
85774056 - 85851289
77234
ENSAPLT00000003193
85774056 - 85824291
50236