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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85789623_85789713_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
85789623 - 85789713
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCCAACCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
TTACTCTGAATT
Flanking Amino Acid:
RGEKVVINVPIFKDKNTPSP
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
82.1
24.6
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
71
0.47
1
64.3
41.8
Minor 5ss
31.3
-2.1
2.7
33.5
35.5
Minor BPS
65
0.55
1.4
79.16
36.6

Associated Gene:

Gene:
GCLC
Ensembl Gene ID:
ENSAPLG00000003104
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020949
85774056 - 85851289
77234
ENSAPLT00000003193
85774056 - 85824291
50236
ENSAPLT00000040450
85764278 - 85806147
41870