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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85792955_85794261_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
85792955 - 85794261
Intron Length:
1307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTTAAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTTTTAAAG
Flanking Amino Acid:
LQDKGEKINPNHPTLWRPEY
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
0.9
75
35.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.5
0.69
1
82.4
32.9
Minor 5ss
32.3
-2
2.7
37.1
33.8
Minor BPS
67.6
0.41
1.4
69.32
37.9

Associated Gene:

Gene:
GCLC
Ensembl Gene ID:
ENSAPLG00000003104
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040450
85764278 - 85806147
41870
ENSAPLT00000020949
85774056 - 85851289
77234
ENSAPLT00000003193
85774056 - 85824291
50236