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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85840262_85842145_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
85840262 - 85842145
Intron Length:
1884

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTATT
5'SS Class:
strong_major
3'SS Sequence:
TTAATGCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CTGTTTTTAATG
Flanking Amino Acid:
QAKHAVSNFCRYDPRFNTWI
Intron Amino Acid Position:
391

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
1
90.9
28.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
77.6
0.62
1
73.8
41.3
Minor 5ss
47.2
-0.3
2.7
68.8
41.8
Minor BPS
64.2
0.31
1.4
61.75
41.5

Associated Gene:

Gene:
KLHL31
Ensembl Gene ID:
ENSAPLG00000003101
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003138
85839072 - 85845707
6636