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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85843350_85845646_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
85843350 - 85845646
Intron Length:
2297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGGGT
5'SS Class:
major
3'SS Sequence:
ATTTTATTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TAGCTCTAAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
67.8
43.5
Major BPS
100
1.24
0.5
100
0
Major PPT
84.2
0.77
0.8
82.6
33.5
Minor 5ss
30.5
-2.2
3.6
38.1
46.8
Minor BPS
59.5
0.38
1.7
74.13
42.6

Associated Gene:

Gene:
KLHL31
Ensembl Gene ID:
ENSAPLG00000003101
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003138
85839072 - 85845707
6636