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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85851206_85856662_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
85851206 - 85856662
Intron Length:
5457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGCGGGG
5'SS Class:
major
3'SS Sequence:
TGTTTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TATCTAATAAAA
Flanking Amino Acid:
RLGRAEQPAEILKALEVLKN
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.5
0.32
1.3
51
43.3
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
87.9
0.85
0.7
85.4
29.3
Minor 5ss
32.8
-2
3.8
46.4
49
Minor BPS
46.5
-0.2
1.9
61.87
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002982
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003022
85851053 - 85868521
17469