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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85858701_85859790_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
85858701 - 85859790
Intron Length:
1090

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTATG
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTGTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCAGAT
U12 Branch Point Sequence:
TGGGATGTATTT
Flanking Amino Acid:
WKKLIPPENKSDHRGRKNAE
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.8
38.5
Major BPS
65.3
0.38
1
60.7
37.6
Major PPT
82.1
0.72
0.9
76.3
37.7
Minor 5ss
38
-1.4
3.1
50.1
46.4
Minor BPS
38.1
-0.8
2.2
52.59
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002982
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003022
85851053 - 85868521
17469