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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85860494_85861912_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
85860494 - 85861912
Intron Length:
1419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCAC
5'SS Class:
strong_major
3'SS Sequence:
TGACTGTGCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
ATTTCCTTGACT
Flanking Amino Acid:
DDQSETPSKKTKVASLQDLL
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
72.3
39.5
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
63
0.29
1.1
57.2
43
Minor 5ss
38.2
-1.3
3.1
50.1
46.5
Minor BPS
89.7
1.33
0.8
97.94
24.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002982
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003022
85851053 - 85868521
17469