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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85863081_85863659_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
85863081 - 85863659
Intron Length:
579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
TCCTCTCTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
GCTACTAAAAGT
Flanking Amino Acid:
CIRVLQNNIDSLHEVGGVPF
Intron Amino Acid Position:
431

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
75.3
33.8
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
81.1
0.7
0.7
76.7
25.3
Minor 5ss
35.5
-1.6
2.9
49.8
40.3
Minor BPS
41.9
-0.5
2.1
57.8
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002982
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003022
85851053 - 85868521
17469