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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85864732_85865245_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
85864732 - 85865245
Intron Length:
514

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
GCTTCTGTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCACAT
U12 Branch Point Sequence:
TGCTTCTGTATT
Flanking Amino Acid:
ILSAQAKKPKGRQVKMAYMT
Intron Amino Acid Position:
524

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
68.9
0.47
1
75
30
Major PPT
67.4
0.39
1
66.5
39.4
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
49.7
0.06
1.8
68.72
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002982
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003022
85851053 - 85868521
17469