Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85898991_85899132_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

85898991 - 85899132

Intron Length:

142

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CGG|GCGCAGCGC

5'SS Class:

weak_major

3'SS Sequence:

CGCCTGACATCAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GCCTGAC

U12 Branch Point Sequence:

CCCGCCTGACAT

Flanking Amino Acid:

RPRRGIAGRRRGPPRGRAVL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

52.1

0.05

1.3

45.9

38.7

Major BPS

51.1

0.03

1.2

39.9

Major PPT

58.9

0.2

55.5

38.9

Minor 5ss

13.2

-4.3

3.6

14.7

28.8

Minor BPS

43.1

-0.4

1.9

53.15

47.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021048

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031980

85897312 - 85899390

2079