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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85929363_85932301_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
85929363 - 85932301
Intron Length:
2939

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATTTCC
5'SS Class:
strong_major
3'SS Sequence:
AATATCTCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AAGTCCTTGACT
Flanking Amino Acid:
VADFSGNPLTRLPESFPELQ
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
77.7
31.1
Major BPS
83
0.82
0.8
82
24.9
Major PPT
65.6
0.35
0.9
58.8
37.3
Minor 5ss
41.5
-0.9
2.7
54.2
42.9
Minor BPS
77.4
0.95
1.1
82.52
38.6

Associated Gene:

Gene:
LRRC1
Ensembl Gene ID:
ENSAPLG00000002577
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002631
85899352 - 85966915
67564