About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85932392_85945550_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
85932392 - 85945550
Intron Length:
13159

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
SLQALPENIGNLYNLASLEL
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
81.6
33.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
93.8
0.99
0.6
92.5
25.7
Minor 5ss
45.5
-0.5
2.8
58.6
40.2
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
LRRC1
Ensembl Gene ID:
ENSAPLG00000002577
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002631
85899352 - 85966915
67564