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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85945608_85947260_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
85945608 - 85947260
Intron Length:
1653

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTGAC
5'SS Class:
major
3'SS Sequence:
ACTTATCTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTTGTTTTGACT
Flanking Amino Acid:
LRENLLTYLPESLAQLQRLE
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
69.5
35.6
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
75.7
0.58
0.9
68.9
36.2
Minor 5ss
34.3
-1.8
3.2
40
40.1
Minor BPS
71.1
0.75
1.3
85.97
34.5

Associated Gene:

Gene:
LRRC1
Ensembl Gene ID:
ENSAPLG00000002577
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002631
85899352 - 85966915
67564