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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85947325_85948056_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
85947325 - 85948056
Intron Length:
732

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTGTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGACAT
U12 Branch Point Sequence:
TGTTGTTTGACA
Flanking Amino Acid:
DLGNNELYHLPETIGALFNL
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
70.3
35.8
Major BPS
67.6
0.44
1.2
75
40
Major PPT
81.5
0.71
0.9
76.5
37.7
Minor 5ss
35.8
-1.6
3.3
43.1
45.5
Minor BPS
63.3
0.41
1.8
74.82
36.8

Associated Gene:

Gene:
LRRC1
Ensembl Gene ID:
ENSAPLG00000002577
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002631
85899352 - 85966915
67564