About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85948132_85949774_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
85948132 - 85949774
Intron Length:
1643

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGACG
5'SS Class:
major
3'SS Sequence:
TCTTGTGTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CATGTTTGAACA
Flanking Amino Acid:
DGNQLAEIPQEVGNLKNLLC
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
69.4
41.1
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
77.5
0.62
0.9
72.2
37.8
Minor 5ss
31.9
-2.1
3.1
40.4
45.5
Minor BPS
51.9
0.06
1.5
60.37
40

Associated Gene:

Gene:
LRRC1
Ensembl Gene ID:
ENSAPLG00000002577
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002631
85899352 - 85966915
67564