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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85949920_85952656_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
85949920 - 85952656
Intron Length:
2737

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTGTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAAAC
U12 Branch Point Sequence:
CTAAGCCAAACA
Flanking Amino Acid:
NLIQVLPDGIGKLRKLSILK
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.93
0.8
82.4
29.8
Major BPS
50.8
0.02
0.9
57
25.1
Major PPT
83.4
0.75
0.9
76.7
37.4
Minor 5ss
36.2
-1.6
2.6
40.7
39.2
Minor BPS
41.3
-0.6
2.3
53.45
44.6

Associated Gene:

Gene:
LRRC1
Ensembl Gene ID:
ENSAPLG00000002577
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002631
85899352 - 85966915
67564