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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_85953879_85962165_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
85953879 - 85962165
Intron Length:
8287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTAATATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
TTTTCTCTAATA
Flanking Amino Acid:
RNKLTSLPKEIGGCCSLNVF
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.2
1.11
0.7
90.9
28.7
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
74.5
0.55
0.9
70.2
34.1
Minor 5ss
40.2
-1.1
3.1
58.6
45.9
Minor BPS
72.4
0.7
1.6
83.86
29.9

Associated Gene:

Gene:
LRRC1
Ensembl Gene ID:
ENSAPLG00000002577
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002631
85899352 - 85966915
67564